PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531038.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 85aa    MW: 9615.55 Da    PI: 9.8481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-091559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++ 
   XP_010531038.1 15 SWTPKQNKLFERALAIYDKDtpdRWQNVANAVG-GKSAEEVKRHYE 59
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.5541166IPR017884SANT domain
SMARTSM007171.4E-81264IPR001005SANT/Myb domain
SuperFamilySSF466892.5E-131470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-51568IPR009057Homeodomain-like
PfamPF002491.3E-71559IPR001005SANT/Myb domain
CDDcd001672.62E-52262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASTSITSSR SSSSSWTPKQ NKLFERALAI YDKDTPDRWQ NVANAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPHPNYRK SGNSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-32682177RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531038.18e-58PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-41RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9MXN39e-46B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.13e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.11e-32RAD-like 4